
Acquisition and Loss of Secondary Metabolites Shaped the …
Feb 21, 2019 · To investigate which genes or gene families were potentially unique to the WGD species, we performed an OrthoMCL orthologous protein clustering on all annotated WGD …
Single-cell transcriptomic analysis reveals genome evolution in ...
Our comprehensive analyses suggest that the rewired cellular metabolism via expanded gene families and WGD events might be the potential genetic basis for the predation ability of …
Insights into Three Whole-Genome Duplications Gleaned from the ...
Paramecium has long been a model eukaryote. The sequence of the Parameciumtetraurelia genome reveals a history of three successive whole-genome duplications (WGDs), and the …
Dynamics of Gene Loss following Ancient Whole-Genome
May 2, 2023 · Whole-genome duplications (WGDs) have shaped the gene repertoire of many eukaryotic lineages. The redundancy created by WGDs typically results in a phase of massive …
The neutral rate of whole-genome duplication varies among ... - Nature
May 25, 2021 · Here we show, by measuring the spontaneous rate of WGD of more than 1300 yeast crosses evolved under relaxed selection, that some genotypes or combinations of …
Evolution After Whole-Genome Duplication: A Network Perspective
Nov 1, 2013 · In this work, we analyze a data set of gene pairs that arose through whole-genome duplication (WGD) in yeast. All these pairs have the same duplication time, making them ideal …
Welcome to WGDI’s Documentation! — WGDI 0.71 documentation
WGDI (Whole-Genome Duplication Integrated analysis) is a Python-based command-line tool designed to facilitate comprehensive analysis of recursive polyploidization events and cross …
Whole Genome Duplication in Plants: Implications for …
Dec 26, 2017 · The recurrent cycle of whole genome duplication (WGD) followed by massive duplicate gene loss (fractionation) differentiates plant evolutionary history from that of most …
GitHub - SunPengChuan/wgdi: WGDI: A user-friendly toolkit for ...
WGDI (Whole-Genome Duplication Integrated analysis) is a Python-based command-line tool designed to simplify the analysis of whole-genome duplications (WGD) and cross-species …
Single-cell transcriptomic analysis reveals genome evolution in ...
Apr 1, 2024 · Our comprehensive analyses suggest that the rewired cellular metabolism via expanded gene families and WGD events might be the potential genetic basis for the …