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  1. Identifiers in PDB - RCSB PDB

    Oct 5, 2024 · Every experimental structure in the PDB is assigned a 4-character alphanumeric identifier called the PDB identifier or PDB ID (e.g., 2hbs). In some cases, large groups of structures (e.g., a protein bound to a series of different inhibitors/drugs) are submitted to the PDB.

  2. RCSB PDB: Homepage

    Search, view, and download all PDB structures using their extended PDB ID. wwPDB anticipates that all four-character PDB IDs will be exhausted by 2028, after which only 12-character PDB IDs will be issued.

  3. RCSB PDB

    As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to …

  4. Organization of 3D Structures in the Protein Data Bank - RCSB PDB

    Oct 25, 2023 · An ENTRY is all data pertaining to a particular structure deposited in the PDB and is designated with a 4-character alphanumeric identifier called the PDB identifier or PDB ID (e.g., 2hbs). An ENTITY is a chemically unique molecule that may be polymeric, such as a protein chain or a DNA strand, or non-polymeric, such as a soluble ligand.

  5. PDB-101: Learn: Guide to Understanding PDB Data: PDB Overview

    PDB Overview The PDB archive is a repository of atomic coordinates and other information describing proteins and other important biological macromolecules. Structural biologists use methods such as X-ray crystallography, NMR spectroscopy, and cryo-electron microscopy to determine the location of each atom relative to each other in the molecule.

  6. PDB-101: Learn: Guide to Understanding PDB Data: Introduction

    Researchers around the globe make 3D structures freely available from the Protein Data Bank (PDB) archive. PDB-101 training materials help graduate students, postdoctoral scholars, and researchers use PDB data and RCSB PDB tools.

  7. PDB-101: Home Page

    Researchers around the globe make 3D structures freely available from the Protein Data Bank (PDB) archive. PDB-101 training materials help graduate students, postdoctoral scholars, and researchers use PDB data and RCSB PDB tools.

  8. RCSB PDB - 3D View

    See Citation Policies for referencing Mol*, RCSB PDB, PDB structures, and Computed Structure Models.

  9. RCSB PDB Search API: Understanding and Using

    Apr 8, 2020 · Returns a list of PDB IDs appended with asym IDs in the format of a [pdb_id].[asym_id], corresponding to instances of certain polymeric molecular entities, also known as chains.

  10. RCSB PDB - 1MBN: The stereochemistry of the protein myoglobin

    1MBN | pdb_00001mbn The stereochemistry of the protein myoglobin . PDB DOI: https://doi.org/10.2210/pdb1MBN/pdb; Classification: OXYGEN STORAGE; Organism(s): Physeter macrocephalus; Mutation(s): No ; Deposited: 1973-04-05 Released: 1976-05-19 ; Deposition Author(s): Watson, H.C., Kendrew, J.C.

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